TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic ,ĪPPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.ĪPPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P1 , This is defined in detail on Canonical, The GENCODE set is the gene set for human and mouse. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. Gene/transcipt that contains an open reading frame (ORF).Protein coding
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